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Periodic boundary conditions
Results: 32

#	Item
21	Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm Sean R. McGuffee¤, Adrian H. Elcock* Department of Biochemistry, University of Iowa, Iowa City, Iowa, United States of Amer Add to Reading List Source URL: www.agnld.uni-potsdam.de Language: English - Date: 2014-06-10 04:41:39 Biochemistry Computational chemistry Molecular biology Proteins Molecular dynamics Molecular modelling Green fluorescent protein Protein folding Periodic boundary conditions Biology Chemistry Protein structure
22	2798 J. Chem. Theory Comput. 2009, 5, 2798–2808 Scaling of Multimillion-Atom Biological Molecular Dynamics Simulation on a Petascale Supercomputer Add to Reading List Source URL: bioenergycenter.org Language: English - Date: 2010-03-03 10:22:16 Molecular modelling Molecular dynamics Intermolecular forces Molecular physics Ewald summation GROMACS Anton Periodic boundary conditions NAMD Chemistry Science Computational chemistry
23	A new approach to (quasi) periodic boundary conditions in micromagnetics: the macro geometry Hans Fangohr,1 Giuliano Bordignon,1,2 , Matteo Franchin,1,2 Andreas Knittel,1 Peter A. J. de Groot,2 Thomas Fischbacher1 School Add to Reading List Source URL: eprints.soton.ac.uk Language: English - Date: 2010-12-20 18:02:02 Mathematics N-sphere CW complex Topology Spheres Periodic boundary conditions
24	Hindawi Publishing Corporation Journal of Atomic, Molecular, and Optical Physics Volume 2012, Article ID[removed], 14 pages doi:[removed][removed]Review Article Add to Reading List Source URL: downloads.hindawi.com Language: English - Date: 2014-05-08 04:22:25 Chemical kinetics Theoretical chemistry Kinetic Monte Carlo Energy Transition state Metastability Metadynamics Periodic boundary conditions Protein folding Chemistry Computational chemistry Molecular dynamics
25	PHYSICS OF PLASMAS 13, 072101 共2006兲 Fully kinetic simulations of undriven magnetic reconnection with open boundary conditions William Daughtona兲 and Jack Scudder Department of Physics and Astronomy, University of Add to Reading List Source URL: www-st.physics.uiowa.edu Language: English - Date: 2006-07-13 14:22:43 Magnetic reconnection Magnetohydrodynamics Particle-in-cell Plasma Magnetosphere Periodic boundary conditions Magnetic field Molecular diffusion Electron Physics Plasma physics Space plasmas
26	Evidence against a Mean Field Description of Short-Range Spin Glasses Revealed through Thermal Boundary Conditions Wenlong Wang Jonathan Machta Add to Reading List Source URL: www.santafe.edu Language: English - Date: 2014-08-28 15:24:41 Ising model Spin glass Markov chain Periodic boundary conditions Spin stiffness Weight Physics Statistical mechanics Mathematical physics
27	Random numbers • Random number generators • Problems (e.g. Marsaglia effect) • Random numbers with different distributions Boundary conditions • Periodic boundary conditions Add to Reading List Source URL: www.phy.bme.hu Language: English - Date: 2014-01-07 07:55:10 Monte Carlo methods Science Combinatorics Algorithm Mathematical logic Theoretical computer science Mathematical optimization Swendsen–Wang algorithm Genetic algorithm Mathematics Applied mathematics Statistical mechanics
28	Computational verification of two universal relations for simple ionic liquids. Self-diffusion and electrical conductivity of a model 2:1 molten salt J. A. Armstrong and P. Ballone Atomistic Simulation Centre, Queen’s Add to Reading List Source URL: www.simpleliquids.org Language: English - Date: 2011-01-08 13:55:40 Physical chemistry Computational chemistry Molecular dynamics Molecular modelling Periodic boundary conditions Radial distribution function Dynamical system Ionic liquid Chemistry Science Physics
29	Submitted to the Journal of Computational Physics[removed]Computation of the High Temperature Coulomb Density Matrix in Periodic Boundary Conditions B. Militzer Add to Reading List Source URL: militzer.berkeley.edu Language: English - Date: 2009-04-27 20:44:42 Crystal Symbol Physics Dynamics Virial theorem
30	PHYSICAL REVIEW E 79, 1 共2009兲 2 Nonlinear stresses and temperatures in transient adiabatic and shear flows via nonequilibrium molecular dynamics: Three definitions of temperature Add to Reading List Source URL: www.williamhoover.info Language: English - Date: 2009-04-10 11:06:13 Aerodynamics Molecular dynamics State functions Fluid dynamics Viscosity Temperature Non-equilibrium thermodynamics Turbulence Periodic boundary conditions Physics Chemistry Thermodynamics